[Biopython-dev] [Bug 1948] uniprot release 49/SProt.Record Parser Problem

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Feb 15 09:37:29 EST 2006


------- Comment #6 from gould at embl.de  2006-02-15 09:37 -------
(In reply to comment #5)
> I have checked in a "short term fix" to the SwissProt parser, see
> Bio/SwissProt/SProt.py revision 1.32
> If you want to test this, the simplest way is just backup your local copy of
> Bio/SwissProt/SProt.py and then replace it with the latest version from CVS via
> this URL:
> http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/SwissProt/SProt.py?cvsroot=biopython
> With this change BioPython will recognise the new style DT lines BUT WILL
> IGNORE THEM and carry on.
> This should allow people to do any analysis they need to, as long as they don't
> need the date information.
> I have logged bug 1956 to do something sensible with the new DT lines.

Yes, I've checked that 'short term fix' and it works for me so thanks for your
help on that matter....

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