[Biopython-dev] [Bug 1948] uniprot release 49/SProt.Record Parser Problem

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=1948


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED




------- Comment #5 from biopython-bugzilla at maubp.freeserve.co.uk  2006-02-15 08:07 -------
I have checked in a "short term fix" to the SwissProt parser, see
Bio/SwissProt/SProt.py revision 1.32

If you want to test this, the simplest way is just backup your local copy of
Bio/SwissProt/SProt.py and then replace it with the latest version from CVS via
this URL:

http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/SwissProt/SProt.py?cvsroot=biopython

With this change BioPython will recognise the new style DT lines BUT WILL
IGNORE THEM and carry on.

This should allow people to do any analysis they need to, as long as they don't
need the date information.

I have logged bug 1956 to do something sensible with the new DT lines.




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