[Biopython-dev] [Bug 2090] Blast.NCBIStandalone BlastParser fails with blastall 2.2.14

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2090


biopython-bugzilla at maubp.freeserve.co.uk changed:

           What    |Removed                     |Added
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         AssignedTo|biopython-dev at biopython.org |biopython-
                   |                            |bugzilla at maubp.freeserve.co.
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------- Comment #8 from biopython-bugzilla at maubp.freeserve.co.uk  2006-12-13 12:06 -------
Created an attachment (id=520)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=520&action=view)
Patch for Bio/Blast/NCBIStandalone.py

test_NCBIStandalone.py still passes with this patch.

It seems to work for BLASTP 2.2.15 (online) but I would like to see some
examples from the standalone 2.2.15 as well please Frank.

Reading your comments, it sounds like 2.2.14 might also be slightly different
too - again, if you have some examples output files please attach them.

Even with this patch, it WILL NOT WORK with multiple input queries on 2.2.15
(unsure about other recent versions).

(I know we want to push the BLAST XML output by default, but that currently has
issues too...)


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