[Biopython-dev] [Bug 2090] Blast.NCBIStandalone BlastParser fails with blastall 2.2.14

[bugzilla-daemon at portal.open-bio.org]

http://bugzilla.open-bio.org/show_bug.cgi?id=2090





------- Comment #7 from biopython-bugzilla at maubp.freeserve.co.uk  2006-12-13 11:53 -------
I've been working with the plain text from BLASTP 2.2.15 (online).

The good news is I think I have something that seems to work for single
queries.

The bad news is that the behaviour for multiple queries has REALLY changed. 
The first line header, here "BLASTP 2.2.15 [Oct-15-2006]" plus the other stuff
like the database reference IS NOT REPEATED before each query line.

i.e. We need to do the split on the "Query=" line for this version...

This is very much like the issue I had with RPS-BLAST 2.2.10 plain text output
discussed on bug 1715 comment 9.  That nasty code was never committed in favour
of pushing XML parsing instead.


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