[Biopython-dev] Hmmer API

[Iddo Friedberg]

hi Folks,

Glen actually gave me the code, but I cannot really give him the 
response it merits, not within th time frame he would like. From a 
cursory look it is "yes, we can accept it, give us contingency tests as 
well". But if soeone can actually run it a couple of times, and see what 
it's like, that would be great.

Sorry Glen, I didn't realize you were that pressed for time.

Cheers,

Iddo


Glen van Ginkel wrote:

>This is a desperate-ish plea to any biopython developer.
>
> 
>
>Recently submitted an explanation of code that interacts with the Hmmer
>(Eddy 2003) suite of programs to the list. I am required to write up a
>project concerning this Hmmer API and would hugely appreciate it if ANY of
>the developers could give me some feed-back. Bearing in mind that this is in
>your spare time, I'm not asking for a major commentary. The focus of the
>project was to produce something that might be accepted as part of the
>BioPython project. What I'm looking for is just a sort of "yeah probably
>will be accepted but.." or "No! you've got a long way to go before we accept
>that gubbins, but.". 
>
> 
>
>I would really appreciate ANY response
>
> 
>
>In anticipation
>
> 
>
>Glen van Ginkel
>
> 
>
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>Biopython-dev at biopython.org
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>
>
>  
>


-- 

Iddo Friedberg, Ph.D.
The Burnham Institute
10901 N. Torrey Pines Rd.
La Jolla, CA 92037
Tel: (858) 646 3100 x3516
Fax: (858) 713 9930
http://ffas.ljcrf.edu/~iddo