[Biopython-dev] Hmmer API

Frank Kauff fkauff at duke.edu
Tue Apr 12 08:59:12 EDT 2005


I'd be happy to have a look at it. I was recently thinking of using
Hmmer to do some alignment for one of my python scripts, so maybe your
API comes in handy. I'm not too familiar with Hmmer yet, though. So I
hope it comes with some example code...?

And thanks for contributing to biopython! 


On Tue, 2005-04-12 at 10:10 +0100, Glen van Ginkel wrote:
> This is a desperate-ish plea to any biopython developer.
> Recently submitted an explanation of code that interacts with the Hmmer
> (Eddy 2003) suite of programs to the list. I am required to write up a
> project concerning this Hmmer API and would hugely appreciate it if ANY of
> the developers could give me some feed-back. Bearing in mind that this is in
> your spare time, I'm not asking for a major commentary. The focus of the
> project was to produce something that might be accepted as part of the
> BioPython project. What I'm looking for is just a sort of "yeah probably
> will be accepted but.." or "No! you've got a long way to go before we accept
> that gubbins, but.". 
> I would really appreciate ANY response
> In anticipation
> Glen van Ginkel
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Frank Kauff
Dept. of Biology
Duke University
Box 90338
Durham, NC 27708

Phone 919-660-7382
Fax 919-660-7293
Web http://www.lutzonilab.net/member/frankkauff.shtml

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