[Biopython-dev] [Bug 1608] NCBIStandalone.py dies parsing long blastpgp -m6 output

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Mar 30 20:07:14 EST 2004


chapmanb at arches.uga.edu changed:

           What    |Removed                     |Added
             Status|NEW                         |RESOLVED
         Resolution|                            |FIXED

------- Additional Comments From chapmanb at arches.uga.edu  2004-03-30 20:07 -------
James, thanks for the report. The problem was that sometimes the line:

Sequences not found previously or not previously below threshold:

which the parser expected to be followed by one or more descriptions, actually
contains no descriptions (ie. there are no more sequences to find). In this case
it kept on trying to get descriptions and got to the error you noted by trying
to parse an alignment line as a description.

Fixes are checked into CVS and a patch is attached to the bug. Thanks!

------- You are receiving this mail because: -------
You are the assignee for the bug, or are watching the assignee.

More information about the Biopython-dev mailing list