[Biopython-dev] GenBank parsing problem

[Chunlei Wu]

Hi, Brad,
    It works now on my computer. But there is
something I want to point out:
1. The current release of biopython 1.00a4 doesn't
include "Std.py" which needed by this new
genbank_format.py. Then I updated my biopython from
CVS including Martel and updated genbank_format.py to
1.17.
2. The code works fine under python shell and IDLE
environment. But can not work under PythonWin's IDE
which raised exactly the same error msg. I cann't
figure out why. It's really strange and make me
frustrated at first. But when I switched to Python
Shell, it worked fine.

Well,anyway, I think this is maybe the problem of
PythonWin.

Hope this will give people some experience who want to
update genbank_format.py.



Chunlei






--- Brad Chapman <chapmanb at arches.uga.edu> wrote:
> Hi Chunlei;
> 
> >     Thank you for your fix. But it seems I can not
> get
> > the latest version of genbank_format.py from CVS.
> The
> > current one is still the old one ver. 1.16. Maybe
> some
> > delay of the server?
> 
> Hmm, you're right. It still is 1.16. The anonymous
> CVS normally syncs up
> with the read/write access CVS in a few hours, so
> maybe something is
> wrong with anonymous CVS (most of the administrators
> are having fun in
> the sun in Arizona right now). 
> 
> Anyways, until the fix moves to anonymous CVS, you
> can grab the changed
> file from:
> 
>
http://www.bioinformatics.org/bradstuff/bp/genbank_format-1.17.py
> 
> Sorry about the pain!
> Brad
> _______________________________________________
> Biopython-dev mailing list
> Biopython-dev at biopython.org
> http://biopython.org/mailman/listinfo/biopython-dev



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