[Biopython-dev] Notification: incoming/55

[Peter Wilkinson]

Yes, 

 release 127 is different from 126

Peter W.

> Message: 1
> Date: Sat, 26 Jan 2002 13:22:55 -0500
> From: biopython-bugs at bioperl.org
> To: biopython-dev at biopython.org
> Subject: [Biopython-dev] Notification: incoming/55
> 
> JitterBug notification
> 
> new message incoming/55
> 
> Message summary for PR#55
> 	From: newgene at bigfoot.com
> 	Subject: GenBank parser problem?
> 	Date: Sat, 26 Jan 2002 13:22:55 -0500
> 	0 replies 	0 followups
> 
> ====> ORIGINAL MESSAGE FOLLOWS <====
> 
> >From newgene at bigfoot.com Sat Jan 26 13:22:55 2002
> Received: from localhost (localhost [127.0.0.1])
> 	by pw600a.bioperl.org (8.11.2/8.11.2) with ESMTP id g0QIMtA00434
> 	for <biopython-bugs at pw600a.bioperl.org>; Sat, 26 Jan 
> 2002 13:22:55 -0500
> Date: Sat, 26 Jan 2002 13:22:55 -0500
> Message-Id: <200201261822.g0QIMtA00434 at pw600a.bioperl.org>
> From: newgene at bigfoot.com
> To: biopython-bugs at bioperl.org
> Subject: GenBank parser problem?
> 
> Full_Name: Chunlei Wu
> Module: Bio/GenBank
> Version: 1.00a4 
> OS: win2000
> Submission from: pathg01-178.mdacc.tmc.edu (143.111.173.178)
> 
> 
> Python version: ActivePython 2.1.1
> 
> Symptom:
> 
> >>> from Bio import GenBank
> >>> gi=GenBank.search_for("NM_007355")[0]
> >>> ncbi_dict=GenBank.NCBIDictionary(parser=GenBank.FeatureParser())
> >>> record=ncbi_dict[gi]
> Traceback (most recent call last):
>   File "<interactive input>", line 1, in ?
>   File "C:\Python21\Bio\GenBank\__init__.py", line 1555, in 
> __getitem__
>     return self.parser.parse(handle)
>   File "C:\Python21\Bio\GenBank\__init__.py", line 268, in parse
>     self._scanner.feed(handle, self._consumer)
>   File "C:\Python21\Bio\GenBank\__init__.py", line 1250, in feed
>     self._parser.parseFile(handle)
>   File "C:\Python21\Martel\Parser.py", line 230, in parseFile
>     self.parseString(fileobj.read())
>   File "C:\Python21\Martel\Parser.py", line 258, in parseString
>     self._err_handler.fatalError(result)
>   File "C:\Python21\lib\xml\sax\handler.py", line 38, in fatalError
>     raise exception
> ParserPositionException: error parsing at or beyond character 55
> >>> 
> 
> 
> Did GenBank change the format?
> Thanks.
> 
> Chunlei
> 
> 
> 
> 
> 
> --__--__--
> 
> _______________________________________________
> Biopython-dev mailing list
> Biopython-dev at biopython.org
> http://biopython.org/mailman/listinfo/biopython-dev
> 
> 
> End of Biopython-dev Digest