[Biopython-dev] Biopython release To-Do

Jeffrey Chang jchang at SMI.Stanford.EDU
Mon Dec 16 02:11:13 EST 2002


Alright, I think we're about ready to make the release.  Please check
in any last minute fixes tomorrow (Monday), so I can build the final
version on Tuesday.  Last minute fixes are things like: documentation
fixes, critical bug fixes (shouldn't be any of those), regression
testing updates, etc.  No destabilizing changes, please!

test_locuslink is still failing, which doesn't bode well for the
package.  Cayte, is this yours?  If we can't get this fixed, we'll
have to save locuslink for the next release.

Jeff




On Mon, Dec 02, 2002 at 08:36:43PM -0800, Jeffrey Chang wrote:
> Hello everybody,
> 
> Thanks for everybody who has been helping getting Biopython ready for
> another release!  Here's a check-list of stuff we still have left to
> do, along with names of who is signed up to do it.  Please send a
> quick progress update on the status of the task, or at least an email
> saying it's not getting done.
> 
> Thanks,
> Jeff
> 
> 
> Biopython Release To-Do
> =======================
> - dalke     BUGZILLA: BerkeleyDB.py Problem?
> - katel     BUGZILLA: Tests/MetaTool/Meta9.out conflicts with meta9.out
> - katel     BUGZILLA: potential conflict between Bio/Rebase/Rebase.py and Bio/Rebase/__init__.py
> - katel     test_locuslink regression test fails
> - gec       BUGZILLA: Bio/SCOP/tests should be integrated with rest of regression tests
> - chapmanb  make sure tutorial is still current
> - chapmanb  make sure example scripts still work
> - jchang    update the NEWS file
> - chapmanb  DocSQL regression test fails
> - grouse    test_GFF regression test fails
> - grouse    test_easy regression test fails
> - grouse    move easy.py and GenericTools.py out of Bio namespace
> 
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