[Biopython-dev] mxTextools install and biopython 2.1

[Iddo Friedberg]

Hi Peter,

On Wed, 24 Oct 2001, Peter Wilkinson wrote:

:
: Does anyone know why the mxTexttools is strangely configures? If activestate
: Python 2.1 comes with Martel, and we install Biopython in the root of the
: install as Bio:
:
: How is mxTexttools supposed to be linked up properly, how and where is it
: installed?I had a problem with my install and I had to redo it. I can not
: figure it out.
:

Hi Peter,

I remember running into the same problems myself, though I'm a bit fuzzy
about the whys and wherefores of the solution. Anyhow, it works for me,
so I checked my

/usr/local/lib/Python2.1/site-packages/mx tree. Apparently I put a dummy
__init__.py file under mx/ directory, and the rest is undes mx/TextTools

I'm attaching the tree scheme. I hope this helps.

Iddo


--

Iddo Friedberg                                  | Tel: +972-2-6757374
Dept. of Molecular Genetics and Biotechnology   | Fax: +972-2-6757308
The Hebrew University - Hadassah Medical School | email: idoerg at cc.huji.ac.il
POB 12272, Jerusalem 91120                      |
Israel                                          |
http://bioinfo.md.huji.ac.il/marg/people-home/iddo/


-------------- next part --------------
From idoerg at arrakis.md.huji.ac.il Thu Oct 25 09:53:00 2001
Date: Thu, 25 Oct 2001 09:49:33 +0200
From: Iddo Friedberg <idoerg at arrakis.md.huji.ac.il>
To: idoerg at cc.huji.ac.il

/usr/local/lib/python2.1/site-packages/mx/
|-- TextTools
|   |-- Constants
|   |   |-- Sets.py
|   |   |-- Sets.pyc
|   |   |-- TagTables.py
|   |   |-- TagTables.pyc
|   |   |-- __init__.py
|   |   `-- __init__.pyc
|   |-- Doc
|   |   `-- mxTextTools.html
|   |-- Examples
|   |   |-- HTML.py
|   |   |-- HTML.pyc
|   |   |-- Loop.py
|   |   |-- Python.py
|   |   |-- RTF.py
|   |   |-- RegExp.py
|   |   |-- Tim.py
|   |   |-- Words.py
|   |   |-- __init__.py
|   |   |-- __init__.pyc
|   |   |-- altRTF.py
|   |   `-- pytag.py
|   |-- LICENSE
|   |-- Makefile.pkg
|   |-- README
|   |-- TextTools.py
|   |-- TextTools.pyc
|   |-- __init__.py
|   |-- __init__.pyc
|   `-- mxTextTools
|       |-- Makefile
|       |-- Makefile.pre
|       |-- Makefile.pre.in
|       |-- Setup
|       |-- Setup.in
|       |-- __init__.py
|       |-- __init__.pyc
|       |-- config.c
|       |-- mx.h
|       |-- mxTextTools.c
|       |-- mxTextTools.def
|       |-- mxTextTools.h
|       |-- mxTextTools.o
|       |-- mxTextTools.pyd
|       |-- mxTextTools.so
|       |-- mxbmse.c
|       |-- mxbmse.h
|       |-- mxbmse.o
|       |-- mxh.h
|       |-- mxpyapi.h
|       |-- mxstdlib.h
|       |-- mxte.c
|       |-- mxte.h
|       |-- mxte.o
|       |-- sedscript
|       `-- test.py
|-- __init__.py
`-- __init__.pyc

5 directories, 54 files