[Bioperl-l] Redmine server down

Fri Aug 16 14:14:33 UTC 2013

Hello all,

Not sure if there is an specific email to report about Redmine, but the
webpage has not been responding for some days, and now it gives me the
following message down below.

Cheers,

Francisco J. Ossandon

Ruby on Rails application could not be started

There appears to be a database problem. 

*	Your config/database.yml may not be written correctly. Please check
it and fix any errors. 
*	Your database schema may be out of date or nonexistant. Please run
rake db:migrate to ensure that the database schema is up-to-date. 
*	The database server may not be running. Please check whether it's
running, and start it if it isn't. 

Error message:

Can't connect to local MySQL server through socket
'/var/lib/mysql/mysql.sock' (2) (Mysql::Error)

Exception class:

Mysql::Error 

Application root:

/home/webapps/redmine-1.1.1 

Backtrace:

#

File

Line

Location

0

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/mysql_adapter.rb

589

in `real_connect'

1

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/mysql_adapter.rb

589

in `connect'

2

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/mysql_adapter.rb

203

in `initialize'

3

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/mysql_adapter.rb

75

in `new'

4

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/mysql_adapter.rb

75

in `mysql_connection'

5

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

223

in `send'

6

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

223

in `new_connection'

7

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

245

in `checkout_new_connection'

8

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

188

in `checkout'

9

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

184

in `loop'

10

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

184

in `checkout'

11

/usr/lib/ruby/1.8/monitor.rb

242

in `synchronize'

12

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

183

in `checkout'

13

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

98

in `connection'

14

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_pool.rb

326

in `retrieve_connection'

15

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_specification.rb

123

in `retrieve_connection'

16

/home/webapps/redmine-1.1.1/vendor/rails/activerecord/lib/active_record/conn
ection_adapters/abstract/connection_specification.rb

115

in `connection'

17

/home/webapps/redmine-1.1.1/vendor/plugins/awesome_nested_set/lib/awesome_ne
sted_set.rb

217

in `quoted_left_column_name'

18

/home/webapps/redmine-1.1.1/vendor/plugins/awesome_nested_set/lib/awesome_ne
sted_set.rb

93

in `acts_as_nested_set'

19

/home/webapps/redmine-1.1.1/app/models/issue.rb

37

20

/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb

31

in `gem_original_require'

21

/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb

31

in `require'

22

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/de
pendencies.rb

158

in `require'

23

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/de
pendencies.rb

265

in `require_or_load_without_engine_additions'

24

/home/webapps/redmine-1.1.1/vendor/plugins/engines/lib/engines/rails_extensi
ons/dependencies.rb

132

in `require_or_load'

25

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/de
pendencies.rb

224

in `depend_on'

26

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/de
pendencies.rb

136

in `require_dependency'

27

/home/webapps/redmine-1.1.1/vendor/plugins/redmine_newissuealerts/init.rb

6

in `evaluate_init_rb'

28

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

182

in `call'

29

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

182

in `evaluate_method'

30

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

166

in `call'

31

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

90

in `run'

32

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

90

in `each'

33

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

90

in `send'

34

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

90

in `run'

35

/home/webapps/redmine-1.1.1/vendor/rails/activesupport/lib/active_support/ca
llbacks.rb

276

in `run_callbacks'

36

/home/webapps/redmine-1.1.1/vendor/rails/actionpack/lib/action_controller/di
spatcher.rb

51

in `send'

37

/home/webapps/redmine-1.1.1/vendor/rails/actionpack/lib/action_controller/di
spatcher.rb

51

in `run_prepare_callbacks'

38

/home/webapps/redmine-1.1.1/vendor/rails/railties/lib/initializer.rb

631

in `prepare_dispatcher'

39

/home/webapps/redmine-1.1.1/vendor/rails/railties/lib/initializer.rb

185

in `process'

40

/home/webapps/redmine-1.1.1/vendor/rails/railties/lib/initializer.rb

113

in `send'

41

/home/webapps/redmine-1.1.1/vendor/rails/railties/lib/initializer.rb

113

in `run'

42

/home/webapps/redmine-1.1.1/config/environment.rb

23

43

/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb

31

in `gem_original_require'

44

/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb

31

in `require'

45

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/classic_ra
ils/application_spawner.rb

222

in `preload_application'

46

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/classic_ra
ils/application_spawner.rb

181

in `initialize_server'

47

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/utils.rb

572

in `report_app_init_status'

48

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/classic_ra
ils/application_spawner.rb

174

in `initialize_server'

49

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver.rb

204

in `start_synchronously'

50

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver.rb

180

in `start'

51

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/classic_ra
ils/application_spawner.rb

149

in `start'

52

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/spawn_mana
ger.rb

219

in `spawn_rails_application'

53

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver_collection.rb

132

in `lookup_or_add'

54

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/spawn_mana
ger.rb

214

in `spawn_rails_application'

55

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver_collection.rb

82

in `synchronize'

56

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver_collection.rb

79

in `synchronize'

57

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/spawn_mana
ger.rb

213

in `spawn_rails_application'

58

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/spawn_mana
ger.rb

132

in `spawn_application'

59

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/spawn_mana
ger.rb

275

in `handle_spawn_application'

60

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver.rb

357

in `__send__'

61

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver.rb

357

in `server_main_loop'

62

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/lib/phusion_passenger/abstract_s
erver.rb

206

in `start_synchronously'

63

/usr/lib/ruby/gems/1.8/gems/passenger-3.0.4/helper-scripts/passenger-spawn-s
erver

99

Powered by  <http://www.modrails.com/> Phusion Passenger, mod_rails /
mod_rack for Apache. 