[Bioperl-l] Help connecting to Genbank...?

[shalabh sharma]

You sure you installed bioperl ?

On Wed, Sep 26, 2012 at 5:13 PM, shalabh sharma
<shalabh.sharma7 at gmail.com>wrote:

> Hey Damein,
>                      Can you send the error you getting because this
> should work fine.
>
> -Shalabh
>
>
> On Wed, Sep 26, 2012 at 4:55 PM, Damien OHalloran <
> damienmohalloran at yahoo.co.uk> wrote:
>
>>
>> I'm a newbie trying to to download DNA sequences from Genbank. I used the
>> script below but I get the error "cant locate Bio/SeqIO.pm" - help?
>>
>> #!/usr/bin/perl -w
>> use Bio::SeqIO;
>> use Bio::DB::GenBank;
>> $genBank = new Bio::DB::GenBank;
>> my $seq = $genBank->get_Seq_by_acc('AF060485');
>> my $seqOut = new Bio::SeqIO(-format => 'genbank');
>> $seqOut->write_seq($seq);
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>
>
>
> --
> Shalabh Sharma
> Scientific Computing Professional Associate (Bioinformatics Specialist)
> Department of Marine Sciences
> University of Georgia
> Athens, GA 30602-3636
>



-- 
Shalabh Sharma
Scientific Computing Professional Associate (Bioinformatics Specialist)
Department of Marine Sciences
University of Georgia
Athens, GA 30602-3636