[Bioperl-l] Help connecting to Genbank...?

[shalabh sharma]

Hey Damein,
                     Can you send the error you getting because this should
work fine.

-Shalabh

On Wed, Sep 26, 2012 at 4:55 PM, Damien OHalloran <
damienmohalloran at yahoo.co.uk> wrote:

>
> I'm a newbie trying to to download DNA sequences from Genbank. I used the
> script below but I get the error "cant locate Bio/SeqIO.pm" - help?
>
> #!/usr/bin/perl -w
> use Bio::SeqIO;
> use Bio::DB::GenBank;
> $genBank = new Bio::DB::GenBank;
> my $seq = $genBank->get_Seq_by_acc('AF060485');
> my $seqOut = new Bio::SeqIO(-format => 'genbank');
> $seqOut->write_seq($seq);
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-- 
Shalabh Sharma
Scientific Computing Professional Associate (Bioinformatics Specialist)
Department of Marine Sciences
University of Georgia
Athens, GA 30602-3636