[Bioperl-l] hmmer3 to hmmer2

[Fields, Christopher J]

Thomas,

I highly doubt it.  Most of the SearchIO parsers are very input-centric (in fact, there isn't a write_result method for SearchIO that I know of).  You could possiby write one up, using the Bio::SearchIO::Writer modules as a model.

Any reason why you need this? Seems a bit unusual.

chris

On May 8, 2012, at 3:04 PM, Thomas, Dallas wrote:

> Hello,
> 
> 
> 
> I was wondering if you could use the updated Bio::SearchIO::hmmer to
> take as input the out file of hmmer3 and output its equivalent in hmmer2
> format.
> 
> 
> 
> Thanks
> 
> Dallas
> 
> 
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