[Bioperl-l] bioperl 1.6. and Perl API

Hermann Norpois hnorpois at googlemail.com
Tue May 8 20:30:47 UTC 2012


Hello,

I installed bioperl 1.6.901-1 on ubuntu. Is it compatible with Perl API?
Ensembl seems to prefer an older version:
http://www.ensembl.org/info/docs/api/api_installation.html. I downloaded
the four API packages and put them in /usr/share/perl5 (location of the
already installes bio-perl-modules).
If I start my testscript I get:

Can't locate Bio/EnsEMBL/Registry.pm in @INC (@INC contains: /etc/perl
/usr/local/lib/perl/5.12.4 /usr/local/share/perl/5.12.4 /usr/lib/perl5
/usr/share/perl5 /usr/lib/perl/5.12 /usr/share/perl/5.12
/usr/local/lib/site_perl .)


But @INV contains:
/etc/perl
/usr/local/lib/perl/5.12.4
/usr/local/share/perl/5.12.4
/usr/lib/perl5
/usr/share/perl5
/usr/lib/perl/5.12
/usr/share/perl/5.12
/usr/local/lib/site_perl

So principally the module should be found.

Thanks
Hermann Norpois



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