[Bioperl-l] Bio::Seq->subseq documentation

[Jim Hu]

Is the doc generated from bioperl-live or from the last stable version?  If the former, I suppose I could change it in git (or ask Nathan in my lab to do it).

On May 18, 2012, at 9:49 AM, Joel Martin wrote:

> the documentation for Bio::Seq looks out of sync to me, the code for
> Bio::Seq is just
> sub subseq {
>    return shift->primary_seq()->subseq(@_);
> }
> 
> so, it takes what Bio::PrimarySeq takes.
> 
> Joel
> 
> On Thu, May 17, 2012 at 10:07 PM, Jim Hu <jimhu at tamu.edu> wrote:
>> In the page for Bio::Seq,
>> 
>>        http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/Seq.html#POD5
>> 
>> I think the usage should match the documentation for Bio::PrimarySeq
>> 
>>        http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/PrimarySeq.html#POD4
>> 
>> indicating that the arguments can be integers OR location objects.  Is that correct?
>> 
>> Jim
>> =====================================
>> Jim Hu
>> Professor
>> Dept. of Biochemistry and Biophysics
>> 2128 TAMU
>> Texas A&M Univ.
>> College Station, TX 77843-2128
>> 979-862-4054
>> 
>> 
>> 
>> _______________________________________________
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=====================================
Jim Hu
Professor
Dept. of Biochemistry and Biophysics
2128 TAMU
Texas A&M Univ.
College Station, TX 77843-2128
979-862-4054