[Bioperl-l] Bio::Seq->subseq documentation

Joel Martin j_martin at lbl.gov
Fri May 18 10:49:59 EDT 2012


the documentation for Bio::Seq looks out of sync to me, the code for
Bio::Seq is just
sub subseq {
    return shift->primary_seq()->subseq(@_);
}

so, it takes what Bio::PrimarySeq takes.

Joel

On Thu, May 17, 2012 at 10:07 PM, Jim Hu <jimhu at tamu.edu> wrote:
> In the page for Bio::Seq,
>
>        http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/Seq.html#POD5
>
> I think the usage should match the documentation for Bio::PrimarySeq
>
>        http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/PrimarySeq.html#POD4
>
> indicating that the arguments can be integers OR location objects.  Is that correct?
>
> Jim
> =====================================
> Jim Hu
> Professor
> Dept. of Biochemistry and Biophysics
> 2128 TAMU
> Texas A&M Univ.
> College Station, TX 77843-2128
> 979-862-4054
>
>
>
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