[Bioperl-l] How to install 1.6.2

[Scott Cain]

Hi Minh,

I don't know why that test failed, but if you don't need to parse or
produce EMBL files, it doesn't matter (and even if you do, it still
may not matter, depending on what the test was).  I suggest
installing.

Scott


On Fri, Feb 4, 2011 at 11:05 AM, Minh Bui <buiduyminh at gmail.com> wrote:
> Oh
> One more thing, I just downloaded Bioperl 1.6.2 and
>
> When I tried to run perl Build.PL, i got this message.
> *
> Checking whether your kit is complete...
> WARNING: the following files are missing in your kit:
>    .shipit
> Please inform the author.
>
> Checking prerequisites...
> Install [a]ll optional external modules, [n]one, or choose [i]nteractively?
> [n]
> *
>
> Then I ran ./Build test but it failed.
>
> Test Summary Report
> -------------------
> t/SeqIO/embl.t                             (Wstat: 512 Tests: 85 Failed: 0)
>  Non-zero exit status: 2
>  Parse errors: Bad plan.  You planned 95 tests but ran 85.
> Files=350, Tests=22459, 96 wallclock secs ( 2.78 usr  0.66 sys + 79.46 cusr
> 4.21 csys = 87.11 CPU)
> Result: FAIL
> Failed 1/350 test programs. 0/22459 subtests failed.
>
> Is there anyway to install 1.6.2 because I really need it. Thank you for
> your help.
>
> On Fri, Feb 4, 2011 at 10:44 AM, Minh Bui <buiduyminh at gmail.com> wrote:
>
>> Hi,
>>
>> I am trying to use the "summary" feature in  bp_seqfeature_load.pl (for
>> Gbrowse) but it requires Bioperl 1.6.2. I have been trying to install
>> 1.6.2 but no luck.
>>
>> First, I used GIT :
>>
>> git clone git://github.com/bioperl/bioperl-live.git
>>
>> and I got this error:
>> *
>> "github.com[0: 207.97.227.239]: errno=Connection timed out
>> fatal: unable to connect a socket (Connection timed out)"
>>
>> *
>> Then, I downloaded snapshot Core Modules on this page http://www.bioperl.org/wiki/Getting_BioPerl but it doesn't work either.
>>
>>
>> could someone please show me how to install 1.6.2 or if there is anyway to use summary feature, please let me know.
>>
>> Thank you very much,
>>
>>
>> --
>> Minh Bui.
>>
>
>
>
> --
> Minh Bui.
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>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research