[Bioperl-l] How to install 1.6.2

Minh Bui buiduyminh at gmail.com
Fri Feb 4 11:05:52 EST 2011


Oh
One more thing, I just downloaded Bioperl 1.6.2 and

When I tried to run perl Build.PL, i got this message.
*
Checking whether your kit is complete...
WARNING: the following files are missing in your kit:
    .shipit
Please inform the author.

Checking prerequisites...
Install [a]ll optional external modules, [n]one, or choose [i]nteractively?
[n]
*

Then I ran ./Build test but it failed.

Test Summary Report
-------------------
t/SeqIO/embl.t                             (Wstat: 512 Tests: 85 Failed: 0)
  Non-zero exit status: 2
  Parse errors: Bad plan.  You planned 95 tests but ran 85.
Files=350, Tests=22459, 96 wallclock secs ( 2.78 usr  0.66 sys + 79.46 cusr
4.21 csys = 87.11 CPU)
Result: FAIL
Failed 1/350 test programs. 0/22459 subtests failed.

Is there anyway to install 1.6.2 because I really need it. Thank you for
your help.

On Fri, Feb 4, 2011 at 10:44 AM, Minh Bui <buiduyminh at gmail.com> wrote:

> Hi,
>
> I am trying to use the "summary" feature in  bp_seqfeature_load.pl (for
> Gbrowse) but it requires Bioperl 1.6.2. I have been trying to install
> 1.6.2 but no luck.
>
> First, I used GIT :
>
> git clone git://github.com/bioperl/bioperl-live.git
>
> and I got this error:
> *
> "github.com[0: 207.97.227.239]: errno=Connection timed out
> fatal: unable to connect a socket (Connection timed out)"
>
> *
> Then, I downloaded snapshot Core Modules on this page http://www.bioperl.org/wiki/Getting_BioPerl but it doesn't work either.
>
>
> could someone please show me how to install 1.6.2 or if there is anyway to use summary feature, please let me know.
>
> Thank you very much,
>
>
> --
> Minh Bui.
>



-- 
Minh Bui.


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