[Bioperl-l] Clean handling of SQLite choice when running ./Build test

[Lincoln Stein]

I'd like to maintain the SQLite tests, but Bio::DB::GFF tests should default
to "memory" (with a visible warning) whenever an unrecognized adaptor is
passed to it.

Lincoln

On Tue, Apr 12, 2011 at 9:38 AM, Scott Cain <scott at scottcain.net> wrote:

> Hi Lincoln and Chris,
>
> I'm wondering what we should do about the SQLite option for testing
> when running ./Build test.  Currently (for me at least :-) when I
> select SQLite as the testing database when running perl Build.PL, the
> Bio::DB::GFF tests get "dubious" (which is fairly amazing, since there
> isn't a SQLite adaptor for Bio::DB::GFF), but it runs a different
> number of tests that planned, thus the dubious.  My inclination would
> be to not include SQLite as a testing option to avoid this problem,
> otherwise I suppose the Bio::DB::GFF test could be modified to use the
> memory adaptor when SQLite is the chosen testing database.
>
> Scott
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot
> net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>



-- 
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
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Assistant: Renata Musa <Renata.Musa at oicr.on.ca>