[Bioperl-l] Review request: Merged hmmer2/3 parser

[Kai Blin]

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Hi folks,

https://github.com/kblin/bioperl-live/commits/hmmer_merged_parser
contains my attempt to get a hmmer parser that is able to detect which
hmmer version output it's given and which parser to call in turn.

I chose to sneak in a Bio::SearchIO::hmmer class into the object
hierarchy that the hmmer2 parser (renamed to Bio::SearchIO::hmmer2) and
the hmmer3 parser subclass from.

I'm not sure if this is the best way to go, though, and I'd like to get
some feedback on the implementation.
The last six patches on
https://github.com/kblin/bioperl-live/commits/hmmer_merged_parser are
the full changeset, the core of the change is in
https://github.com/kblin/bioperl-live/commit/2d4816f1d67880c69948b2ce529fdeb52e0d843f

Thanks in advance for your time,
Kai

- -- 
Dipl.-Inform. Kai Blin         kai.blin at biotech.uni-tuebingen.de
Institute for Microbiology and Infection Medicine
Division of Microbiology/Biotechnology
Eberhard-Karls-Universität Tübingen
Auf der Morgenstelle 28                 Phone : ++49 7071 29-78841
D-72076 Tübingen                        Fax :   ++49 7071 29-5979
Germany
Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben
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