[Bioperl-l] question about Bio::Tools::Run::RemoteBlast

[Chris Fields]

You haven't installed BioPerl (you need more than Bio::Tools::Run::RemoteBlast).  Please see bioperl.org for installation instructions.

chris

On Nov 29, 2010, at 3:22 PM, Mgavi Brathwaite wrote:

> Hello,
> 
> When I run
> Bio::Tools::Run::RemoteBlast I get an error when I enter the line use
> Bio::SeqIO that says *can't locate Bio/SeqIO.pm in @INC*. I downloaded the
> package but can't figure out what the deal is. Any suggestions.
> 
> LomSpace
> 
> On Tue, Nov 9, 2010 at 10:46 PM, Chris Fields <cjfields at illinois.edu> wrote:
> 
>> Only if the output appends to that file (I don't recall personally, so it's
>> worth a try).
>> 
>> chris
>> 
>> On Nov 9, 2010, at 6:54 PM, Florent Angly wrote:
>> 
>>> Wouldn't using a single filename be the way to go?
>>>> my $filename = "blast_ressults.out";
>>>>          $factory->save_output($filename);
>>> Florent
>>> 
>>> 
>>> On 09/11/10 19:05, njauxiongjie wrote:
>>>> Hi,
>>>> 
>>>> I have used the scripts list in section of "SYNOPSIS" in th webpage
>> http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Tools/Run/RemoteBlast.pm<http://search.cpan.org/%7Ecjfields/BioPerl-1.6.1/Bio/Tools/Run/RemoteBlast.pm>
>> .
>>>> 
>>>> there are two line of the code like below:
>>>> my $filename = $result->query_name()."\.out";
>>>>          $factory->save_output($filename);
>>>> this saved the blast result in separated files by the query name.
>>>> 
>>>> my question is: how can i save the blast results of all querys in one
>> file?
>>>> 
>>>> 
>>>> 
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