[Bioperl-l] question about Bio::Tools::Run::RemoteBlast

[Mgavi Brathwaite]

Hello,

When I run
Bio::Tools::Run::RemoteBlast I get an error when I enter the line use
Bio::SeqIO that says *can't locate Bio/SeqIO.pm in @INC*. I downloaded the
package but can't figure out what the deal is. Any suggestions.

LomSpace

On Tue, Nov 9, 2010 at 10:46 PM, Chris Fields <cjfields at illinois.edu> wrote:

> Only if the output appends to that file (I don't recall personally, so it's
> worth a try).
>
> chris
>
> On Nov 9, 2010, at 6:54 PM, Florent Angly wrote:
>
> > Wouldn't using a single filename be the way to go?
> >> my $filename = "blast_ressults.out";
> >>           $factory->save_output($filename);
> > Florent
> >
> >
> > On 09/11/10 19:05, njauxiongjie wrote:
> >> Hi,
> >>
> >> I have used the scripts list in section of "SYNOPSIS" in th webpage
> http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Tools/Run/RemoteBlast.pm<http://search.cpan.org/%7Ecjfields/BioPerl-1.6.1/Bio/Tools/Run/RemoteBlast.pm>
> .
> >>
> >> there are two line of the code like below:
> >> my $filename = $result->query_name()."\.out";
> >>           $factory->save_output($filename);
> >> this saved the blast result in separated files by the query name.
> >>
> >> my question is: how can i save the blast results of all querys in one
> file?
> >>
> >>
> >>
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