[Bioperl-l] Jaccard Dendrogram

[Dave Messina]

Hi Rondon,

No, I don't think BioPerl has the ability to do Jaccard distance
calculations. Looks like SciPy-cluster can, though:

    http://code.google.com/p/scipy-cluster/

Also MATLAB probably.

However, if you or anyone ese should be so inclined, it should be
straightforward to adapt one of the existing BioPerl distance methods. See
e.g. Bio::Align::DNAStatistics:

    http://doc.bioperl.org/bioperl-live/Bio/Align/DNAStatistics.html




Dave





On Sun, Jul 18, 2010 at 05:55, Rondon Neto <rondonbio at yahoo.com.br> wrote:

> Hi! Please, can I build a dendrogram from a jaccard distance matrix by
> Phylogenetic Analysis Pipeline?
> How to do that?
>
> Thank you
>
> Rondon
>
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>