[Bioperl-l] install cpan on mac os x

[José Ramón Blas Pastor]

I follow instructions at
http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix

When I do:
>perl -MCPAN -e shell
cpan> install Bundle::CPAN

...answer Yes to all... and the last lines of my installation are:

t/cz-06gzsetp.t               (Wstat: 65280 Tests: 0 Failed: 0)
  Non-zero exit status: 255
  Parse errors: No plan found in TAP output
t/cz-08encoding.t             (Wstat: 65280 Tests: 1 Failed: 1)
  Failed test:  1
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 29 tests but ran 1.
t/cz-14gzopen.t               (Wstat: 65280 Tests: 2 Failed: 1)
  Failed test:  1
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 255 tests but ran 2.
Files=85, Tests=9260,  9 wallclock secs ( 1.09 usr  0.22 sys +  7.19 cusr
 0.92 csys =  9.42 CPU)
Result: FAIL
Failed 67/85 test programs. 34/9260 subtests failed.
make: *** [test_dynamic] Error 255
  PMQS/IO-Compress-2.027.tar.gz
  /usr/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
  reports PMQS/IO-Compress-2.027.tar.gz
Running make install
  make test had returned bad status, won't install without force
Failed during this command:
 ADAMK/File-HomeDir-0.91.tar.gz               : make_test NO
 PMQS/IO-Compress-2.027.tar.gz                : make_test NO

...any hint on where my failure comes from is appreciated.

More info:
Mac OS X 10.4
Xcode developer tools installed

Thanks,

JR

El 14 de julio de 2010 14:09, Adam Witney <awitney at sgul.ac.uk> escribió:

>
> I have always found the CPAN route the best way of installing BioPerl on
> OSX.
>
> If you are having problems doing this then try posting any errors and
> someone may be able to help
>
> adam
>
>
> On 14 Jul 2010, at 11:35, José Ramón Blas Pastor wrote:
>
> > Hi,
> > I have found several problems when installing CPAN in Mac OS X (version
> > 10.6.4) previous to install Bioperl.
> >
> > What's the best choice for installing Bioperl on Mac OS X? I had it
> > installed by using fink, but several modules are not found, I prefer a
> Unix
> > installation. Is there any trick that I have to bear in mind?
> >
> > Thanks,
> >
> > JR
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>