[Bioperl-l] ID Mapper now in Bio::DB::SwissProt
Chris Fields
cjfields at illinois.edu
Fri Feb 19 20:56:54 EST 2010
Just added an id_mapper function to Bio::DB::SwissProt. This uses the remote UniProt ID Mapper:
http://www.uniprot.org/help/mapping
Following is the documentation:
Title : id_tracker
Usage : my $map = $self->id_mapper( -from => '',
-to => '',
-ids => \@ids);
Function: Retrieve new ID using old ID.
Returns : hash reference of successfully mapped IDs
Args : -from : database mapping from
-to : database mapped to
-ids : a single ID or array ref of IDs to map
Note : For a list of valid database IDs, see:
http://www.uniprot.org/faq/28#id_mapping_examples
Some simple tests are in t/RemoteDB/SwissProt.t.
enjoy!
chris
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