[Bioperl-l] Bio::Matrix::IO

Mark A. Jensen maj at fortinbras.us
Wed Sep 23 15:46:03 UTC 2009


thanks Jose - fixed it
MAJ
----- Original Message ----- 
From: "Jose ." <joseguillin at hotmail.com>
To: <bioperl-l at bioperl.org>
Sent: Wednesday, September 23, 2009 11:08 AM
Subject: [Bioperl-l] Bio::Matrix::IO





Hi,
I've found a typo in the Bio/Matrix/IO/phylip.pm documentation. There's a comma 
missing,
=head1 SYNOPSIS

  use Bio::Matrix::IO;
  my $parser = Bio::Matrix::IO->new(-format   => 'phylip'    <------ comma 
missing
                                   -file     => 't/data/phylipdist.out');
  my $matrix = $parser->next_matrix;

It's also in the CPAN 
web:http://search.cpan.org/~cjfields/BioPerl-1.6.0_2/Bio/Matrix/IO/phylip.pm
And the BioPerl 
web:http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/Matrix/IO/phylip.html

This could mislead BioPerl begginers (like me) or absentminded BioPerl advanced 
who rely on the SYNOPSIS code.
Thank you! :)
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