[Bioperl-l] Bio::Matrix::IO

Jose . joseguillin at hotmail.com
Wed Sep 23 15:08:04 UTC 2009




Hi,
I've found a typo in the Bio/Matrix/IO/phylip.pm documentation. There's a comma missing, 
=head1 SYNOPSIS

  use Bio::Matrix::IO;
  my $parser = Bio::Matrix::IO->new(-format   => 'phylip'    <------ comma missing
                                   -file     => 't/data/phylipdist.out');
  my $matrix = $parser->next_matrix;

It's also in the CPAN web:http://search.cpan.org/~cjfields/BioPerl-1.6.0_2/Bio/Matrix/IO/phylip.pm
And the BioPerl web:http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/Matrix/IO/phylip.html

This could mislead BioPerl begginers (like me) or absentminded BioPerl advanced who rely on the SYNOPSIS code.
Thank you! :)
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