[Bioperl-l] a Main Page proposal

[Hilmar Lapp]

Odd. Something's going on in the page that upsets MediaWiki. I can  
actually pull up the page in edit mode.

Is the citation extension working correctly? The year-by-year pages  
look odd.

	-hilmar

On Sep 25, 2009, at 3:59 AM, Emanuele Osimo wrote:

> Dear Jason,
> it's more than 24 hours that I try connecting to
> http://bioperl.org/wiki/BioPerl_publications, but it won't work.
> Emanuele
>
>
> On Thu, Sep 24, 2009 at 18:23, Jason Stajich <jason at bioperl.org>  
> wrote:
>
>> If someone also wants to volunteer to keep up the publications page  
>> - this
>> is where I *had* been curating a list up by citations and google  
>> scholar
>> searches for 'bioperl' and things that reference 2002 paper.
>>
>> Seems like this is where the static copy of that information should  
>> go -
>> but highlighting things on the a page with a circulating list or  
>> something
>> that just listed recent additions to the list could be done by the  
>> web dev
>> gurus and could be kewl.
>> The current issue is that a) it is large so I think pubmed plugin  
>> rendering
>> can be slow (or gets broken as it seems to be now).
>> http://bioperl.org/wiki/BioPerl_publications
>> http://bioperl.org/wiki/BioPerl_publications/2008
>> http://bioperl.org/wiki/BioPerl_publications/2007
>> etc....
>>
>> -jason
>>
>> On Sep 24, 2009, at 2:38 AM, Dave Messina wrote:
>>
>>
>>>> Not to add yet more to the list, but I also think a concise list of
>>>> projects using (or 'powered by') bioperl should be front-and- 
>>>> center; not
>>>> a
>>>> lot of users know when/where bioperl is used.  This applies to  
>>>> the other
>>>> bio* as well, particularly biopython (seeing it popping up more and
>>>> more).
>>>>
>>>>
>>>
>>> Along these lines, it'd be great to publicize not only
>>> BioPerl-*powered*projects, but ones which interface with it, too.
>>>
>>> Just this week, for example, there is this, which could go both on a
>>> static
>>> page and in the newsfeed:
>>> http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp554v1
>>>
>>> MOODS: fast search for position weight matrix matches in DNA  
>>> sequences.
>>>
>>> Korhonen J, Martinmäki P, Pizzi C, Rastas P, Ukkonen E.
>>> Department of Computer Science and Helsinki Institute for  
>>> Information
>>> Technology,
>>> University of Helsinki, Helsinki, Finland.
>>>
>>> SUMMARY: MOODS (MOtif Occurrence Detection Suite) is a software  
>>> package
>>> for
>>> matching position weight matrices against DNA sequences. MOODS  
>>> implements
>>> state-of-the-art on-line matching algorithms, achieving considerably
>>> faster
>>> scanning speed than with a simple brute-force search. MOODS is  
>>> written in
>>> C++,
>>> with bindings for the popular BioPerl and Biopython toolkits. It can
>>> easily be
>>> adapted for different purposes and integrated into existing  
>>> workflows. It
>>> can
>>> also be used as a C++ library. AVAILABILITY: The package with
>>> documentation and
>>> examples of usage is available at
>>> http://www.cs.helsinki.fi/group/pssmfind. The
>>> source code is also available under the terms of a GNU General  
>>> Public
>>> License
>>> (GPL). CONTACT: janne.h.korhonen at helsinki.fi.
>>>
>>> PMID: 19773334 [PubMed - as supplied by publisher]
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>
>> --
>> Jason Stajich
>> jason.stajich at gmail.com
>> jason at bioperl.org
>>
>>
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>
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>

-- 
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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