[Bioperl-l] a Main Page proposal

[Emanuele Osimo]

Dear Jason,
it's more than 24 hours that I try connecting to
http://bioperl.org/wiki/BioPerl_publications, but it won't work.
Emanuele


On Thu, Sep 24, 2009 at 18:23, Jason Stajich <jason at bioperl.org> wrote:

> If someone also wants to volunteer to keep up the publications page - this
> is where I *had* been curating a list up by citations and google scholar
> searches for 'bioperl' and things that reference 2002 paper.
>
> Seems like this is where the static copy of that information should go -
> but highlighting things on the a page with a circulating list or something
> that just listed recent additions to the list could be done by the web dev
> gurus and could be kewl.
> The current issue is that a) it is large so I think pubmed plugin rendering
> can be slow (or gets broken as it seems to be now).
> http://bioperl.org/wiki/BioPerl_publications
> http://bioperl.org/wiki/BioPerl_publications/2008
> http://bioperl.org/wiki/BioPerl_publications/2007
> etc....
>
> -jason
>
> On Sep 24, 2009, at 2:38 AM, Dave Messina wrote:
>
>
>>> Not to add yet more to the list, but I also think a concise list of
>>> projects using (or 'powered by') bioperl should be front-and-center; not
>>> a
>>> lot of users know when/where bioperl is used.  This applies to the other
>>> bio* as well, particularly biopython (seeing it popping up more and
>>> more).
>>>
>>>
>>
>> Along these lines, it'd be great to publicize not only
>> BioPerl-*powered*projects, but ones which interface with it, too.
>>
>> Just this week, for example, there is this, which could go both on a
>> static
>> page and in the newsfeed:
>> http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp554v1
>>
>> MOODS: fast search for position weight matrix matches in DNA sequences.
>>
>> Korhonen J, Martinmäki P, Pizzi C, Rastas P, Ukkonen E.
>> Department of Computer Science and Helsinki Institute for Information
>> Technology,
>> University of Helsinki, Helsinki, Finland.
>>
>> SUMMARY: MOODS (MOtif Occurrence Detection Suite) is a software package
>> for
>> matching position weight matrices against DNA sequences. MOODS implements
>> state-of-the-art on-line matching algorithms, achieving considerably
>> faster
>> scanning speed than with a simple brute-force search. MOODS is written in
>> C++,
>> with bindings for the popular BioPerl and Biopython toolkits. It can
>> easily be
>> adapted for different purposes and integrated into existing workflows. It
>> can
>> also be used as a C++ library. AVAILABILITY: The package with
>> documentation and
>> examples of usage is available at
>> http://www.cs.helsinki.fi/group/pssmfind. The
>> source code is also available under the terms of a GNU General Public
>> License
>> (GPL). CONTACT: janne.h.korhonen at helsinki.fi.
>>
>> PMID: 19773334 [PubMed - as supplied by publisher]
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>
> --
> Jason Stajich
> jason.stajich at gmail.com
> jason at bioperl.org
>
>
>
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