[Bioperl-l] Regarding Bio::TreeIO Object

[Mark A. Jensen]

Aneesh, 
Have a look in the t/Map directory of the BioPerl distribution. These
are test scripts that are also examples of usage. The t/data directory
will contain the datafiles that the tests use; these will provide example data.
cheers 
Mark 
----- Original Message ----- 
From: "Roy Chaudhuri" <roy.chaudhuri at gmail.com>
To: "Aneesh K" <krishna.aneesh at gmail.com>; <bioperl-l at bioperl.org>
Sent: Tuesday, November 17, 2009 6:24 AM
Subject: Re: [Bioperl-l] Regarding Bio::TreeIO Object


> Hi Aneesh,
> 
> Please keep your replies on the mailing list, that way someone else can 
> respond, which would be particularly useful in this case since I know 
> nothing about MapIO.
> 
> Roy.
> 
> Aneesh K wrote:
>> Thanks for your reply. 
>> 
>> I would like to know about "Genetic Maps" also. I would like to 
>> use MapIO object. 
>> But I'm not aware about genetic maps and the mapmaker format. 
>> 
>> Please tell me from where I can get some examples for mapmaker format 
>> and some example scripts to use MapIO object. 
>> 
>> Hoping your reply.
>> 
>> Aneesh.K
>> Mob. 09646181517
>> 
>> 
>> 
>> On Mon, Nov 16, 2009 at 11:01 PM, Roy Chaudhuri <roy.chaudhuri at gmail.com 
>> <mailto:roy.chaudhuri at gmail.com>> wrote:
>> 
>>     Hi Aneesh,
>> 
>>     See the Bioperl trees howto:
>>     http://www.bioperl.org/wiki/HOWTO:Trees
>> 
>>     Roy.
>> 
>> 
>>     Aneesh K wrote:
>> 
>>         Hi,
>> 
>>         I just started to use Bioperl modules. It's really useful and
>>         interesting.
>>         Now I have in stuck with "Tree objects and phylogenetic trees".
>>         I couldn't get any documentation/examples about reading/parsing
>>         phylip tree
>>         files.
>> 
>>         Please tell me from where I can get some sample codes for this.
>> 
>>         Waiting for your reply.
>> 
>>         Thanks
>>         Aneesh.K
>>         Mob. 09646181517
>> 
>> 
>> 
>>     -- 
>>     Dr. Roy Chaudhuri
>>     Department of Veterinary Medicine
>>     University of Cambridge, U.K.
>> 
>> 
> 
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