[Bioperl-l] Parsing needle/water output
Jason Stajich
jason at bioperl.org
Thu May 14 19:56:01 UTC 2009
Bio::AlignIO::emboss does parse or you can request it in msf format
and parse with Bio::AlignIO::msf
-jason
On May 14, 2009, at 12:53 PM, shalabh sharma wrote:
> Hi All,
> Is there any parser/module available to parse needle/water
> output
> report (from emboss) to get the start and end position of alignment.
>
> Thanks
> Shalabh
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Jason Stajich
jason at bioperl.org
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