[Bioperl-l] Next-gen modules

[Peter]

On Wed, Jun 24, 2009 at 5:22 PM, Chris Fields<cjfields at illinois.edu> wrote:
>> So when you say "fastqint" are you talking about something else?
>> Could you show us an example record in this format?
>>
>> Peter
>
> The same as fastq, except the ASCII quality is converted to actual score:
>
> @4_1_912_360
> AAGGGGCTAGAGAAACACGTAATGAAGGGAGGACTC
> +4_1_912_360
> 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 21 40 40 40 40 40
> 40 40 40 40 26 40 40 14 39 40 40
> @4_1_54_483
> TAATAAATGTGCTTCCTTGATGCATGTGCTATGATT
> +4_1_54_483
> 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 40 16 40 40 40 28 40
> 40 40 40 40 40 16 40 40 5 40 40

OK - and who uses this "Integer FASTQ" files?

Peter