[Bioperl-l] Bio::Moose is now....
Robert Buels
rmb32 at cornell.edu
Fri Jul 31 14:53:08 UTC 2009
I think this sounds great. GREAT news about the Biome::PrimarySeq
performance.
Rob
Chris Fields wrote:
> Biome! This makes the most sense to me; as Mark points out the name
> works as an appropriate acronym (BioPerl with Metaclass Extensions), as
> well as a biome being (per wikipedia):
>
> "a climatically and geographically defined areas of ecologically similar
> climatic conditions such as communities of plants, animals, and soil
> organisms ... often referred to as ecosystems".
>
> Seems a fitting name for a open-source project. I'll be moving the
> namespace over to Biome over the next couple of days on github. Now I
> owe Mark some beer...
>
> Now, for extensions, should I assume this will eventually be BioPerl2
> (and thus use BioX::*)? Or stick with BiomeX::*?
>
> chris
>
> PS: Just a quick benchmark for the current Bio::Moose::PrimarySeq
> implementation (we don't have SeqIO working as of yet, so the benchmark
> script does the heavy lifting):
>
> http://gist.github.com/158317
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--
Robert Buels
Bioinformatics Analyst, Sol Genomics Network
Boyce Thompson Institute for Plant Research
Tower Rd
Ithaca, NY 14853
Tel: 503-889-8539
rmb32 at cornell.edu
http://www.sgn.cornell.edu
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