[Bioperl-l] Is Bio::KEGG:Enzyme implemented?

[Chris Fields]

On Feb 25, 2009, at 8:13 AM, Bryan Bishop wrote:

> Hey all,
>
> I began writing a program to extract a reaction pathway from
> KEGG/reactome and "transplant" it into another genome, along with all
> of the required genetic 'dependencies' (in the sense of deb/rpm,
> apt/yum dependencies). To do this, I started writing a program that
> would parse KEGG's database format-- here's a reference discussion:
>
> http://groups.google.com/group/diybio/browse_frm/thread/d6ec92a5df6b4e74/3b22b31a504f29ca?#3b22b31a504f29ca
>
> Anyway, at first I thought bioperl hadn't implemented KEGG::Enzyme,
> but now I've noticed that biopython does:
>
> http://www.bioinformatics.org/bradstuff/bp/api/Bio/KEGG/Enzyme/enzyme_format.py.html
> actual implementation:
> http://cvs.biopython.org/cgi-bin/viewcvs/viewcvs.cgi/biopython/Bio/KEGG/Enzyme/Attic/enzyme_format.py?rev=HEAD&cvsroot=biopython&content-type=text/vnd.viewcvs-markup
>
> Have I missed the bioperl implementation of this portion?
>
> Thank you :-).
>
> - Bryan
> http://heybryan.org/
> 1 512 203 0507

No, that's for KEGG sequence records.  We would gladly welcome  
anything towards integrating KEGG file parsing within bioperl; I'm  
interested in it myself (working with microarray data).

chris