[Bioperl-l] Bio::Ontology::OBOEngine for parsing obo files?
Nathan Liles
nml5566 at gmail.com
Tue Dec 15 21:37:30 UTC 2009
Is the Bio::Ontology::OBOEngine module working or being currently
maintained? I tried following the documentation in the module:
* use Bio::Ontology::OBOEngine;
my $parser = Bio::Ontology::OBOEngine->new
( -file => "gene_ontology.obo" );
my $engine = $parser->parse();
*But, it throws an error when I run the file saying 'Can't locate object
method "parse" '. Does anyone have any experience getting this module
working; or, is there any alternative bioperl module to extract terms and
relationships out of sequence ontology files?
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