[Bioperl-l] GFF and LocatableSeq refactoring

[Scott Cain]

Hilmar,

The examples in that thread ought to go in the ninth column; using the  
Dbxref tag for references back to GenBank for example.  The  
provenience stuff should go in the ninth column as well, though I  
don't know exactly how would be best.

Scott



On Aug 18, 2009, at 4:01 PM, Hilmar Lapp wrote:

>
> On Aug 18, 2009, at 2:28 PM, Scott Cain wrote:
>
>> Additionally, some applications (SynBrowse comes to mind) overload  
>> the source value and require them to conform to a certain syntax.
>>
>> So, what I'm trying to say is, source should probably just stay a  
>> simple string.
>
>
> I would rephrase that to source should probably retain the  
> possibility of using made-up strings.
>
> You mention one example yourself, and there have been others in a  
> recent thread on BioSQL [1], for why the option to have predictable,  
> structured values with attached semantics could be very useful.
>
> 	-hilmar
>
> [1] http://lists.open-bio.org/pipermail/biosql-l/2009-August/001602.html
>
> -- 
> ===========================================================
> : Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
> ===========================================================
>
>
>
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-----------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research