[Bioperl-l] Problems with Bioperl-ext package on WinVista?

[Chris Fields]

Still seeing that odd warning popping up:

cjfields4:Bio-Tools-HMM cjfields$ ./Build test --verbose
t/001_basics.t .. Argument "FL" isn't numeric in numeric lt (<) at / 
Users/cjfields/bioperl/Bio-Tools-HMM/blib/lib/Bio/Tools/HMM.pm line 185.

Have you tried using Yee Man's original Makefile.PL to see if it works  
better?  There appear to be some differences in the compilation,  
including a linking warning popping up.

chris

On Aug 17, 2009, at 3:32 PM, Robert Buels wrote:

> OK, I split Bio::Tools::HMM and Bio::Ext::HMM off into a new distro  
> at Bio-Tools-HMM in the repo.  The tests are not passing, I think  
> that some bugs need to be fixed in the logic of things.
>
> Yee Man, could you have a look?  To download the newly repackaged  
> code:
>
> svn co svn+ssh://your_login@dev.open-bio.org/home/svn-repositories/ 
> bioperl/Bio-Tools-HMM/trunk Bio-Tools-HMM
>
> perl Build.PL; ./Build test
>
> Please check that things are compiling OK, check the test logic,  
> upgrade the tests to use Test::More, and get the tests to the point  
> where they are passing.
>
> At that point, it should be ready for CPAN, but we need to decide  
> how we want to coordinate that with releases of bioperl-live and  
> bioperl-ext.
>
> Rob
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