[Bioperl-l] genbank2gff3 for prokaryotes?

[Chris Fields]

We (bioperl devs and users) would be very interested to have something  
like this included.  I ran into a similar problem with genbank2gff3 a  
year ago with some of our work here on Archaea.  I managed to get  
enough data out to get gbrowse up-and-running, but it required quite a  
bit of hand-editing.

In fact, seeing as we're refactoring GFF and other aspects of Features  
in bioperl, this may be the best time to add something in.

chris

On Aug 15, 2009, at 10:01 AM, Jim Hu wrote:

> Over on the Gbrowse list, Don Gilbert explained to me why  
> genbank2gff3.pl is having problems with prokaryotic genomes.  Has  
> anyone written an alternative?
>
> Jim Hu
> =====================================
> Jim Hu
> Associate Professor
> Dept. of Biochemistry and Biophysics
> 2128 TAMU
> Texas A&M Univ.
> College Station, TX 77843-2128
> 979-862-4054
>
>
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