[Bioperl-l] Bio::Assembly tests failing

Chris Fields cjfields at illinois.edu
Tue Nov 25 17:31:27 UTC 2008


I am getting tests failing on svn trunk (bioperl-live) that appear  
related to Bio::Assembly changes.  Florent, can you take a look at  
these?

chris

1..4
ok 1 - use Bio::Assembly::IO;
ok 2 - Testing to see if the first contig is a Contig isa  
Bio::Assembly::Contig
not ok 3 - Testing to see if the first singlet is a Singlet isa  
Bio::Assembly::Singlet
not ok 4 - Testing to see if the Singlet ISA Contig isa  
Bio::Assembly::Contig

#   Failed test 'Testing to see if the first singlet is a Singlet isa  
Bio::Assembly::Singlet'
#   at t/singlet.t line 25.
#     Testing to see if the first singlet is a Singlet isn't defined

#   Failed test 'Testing to see if the Singlet ISA Contig isa  
Bio::Assembly::Contig'
#   at t/singlet.t line 27.
#     Testing to see if the Singlet ISA Contig isn't defined
# Looks like you failed 2 tests of 4.
  Dubious, test returned 2 (wstat 512, 0x200)
  Failed 2/4 subtests

Test Summary Report
-------------------
t/singlet.t (Wstat: 512 Tests: 4 Failed: 2)
   Failed tests:  3-4
   Non-zero exit status: 2
Files=1, Tests=4,  1 wallclock secs ( 0.01 usr  0.01 sys +  0.26 cusr   
0.04 csys =  0.32 CPU)
Result: FAIL
Failed 1/1 test programs. 2/4 subtests failed.




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