[Bioperl-l] problem with Bio::Tools::EMBOSS

[Mauricio Herrera Cuadra]

Hi Anjan,

It looks like you are using the latest BioPerl developer release
(bioperl-1.5.2_102) from CPAN, to have Bio::Factory::EMBOSS available
then you should try installing the latest BioPerl-run as well
(bioperl-run-1.5.2_100). After you install it, you'll have to modify
your 'use lib' pragma for your script to work as you expect:

use lib "/Users/anjan/perl_directory/bioperl-run-1.5.2_100/";
use Bio::Factory::EMBOSS;

Hope this helps.

Regards,
Mauricio.


ANJAN PURKAYASTHA wrote:
> hi
> i am tried to use the perl wrappers for EMBOSS with:
> 
> use lib "/Users/anjan/perl_directory/bioperl-1.5.2_102/";
> use Bio::Factory::EMBOSS;
> 
> however it seems that Bio::Factory::EMBOSS cannot be found in the bioperl
> directory mentioned above.
> 
> so i tried to install Bio::Factory::EMBOSS from the cpan website. i got the
> attached error message.
> 
> any ideas on what i need to do to  make this work?
> all advice will be appreciated.
> 
> tia,
> 
> anjan
> 
> 
> 
> 
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-- 
MAURICIO HERRERA CUADRA
arareko at campus.iztacala.unam.mx
Laboratorio de Genética
Unidad de Morfofisiología y Función
Facultad de Estudios Superiores Iztacala, UNAM