[Bioperl-l] problem with Bio::Tools::EMBOSS

[Chris Fields]

You'll need to install bioperl-run.  Bio::Factory::EMBOSS is in  
bioperl-run, not the main bioperl distribution (aka bioperl-core).

chris

On Mar 3, 2008, at 11:31 AM, ANJAN PURKAYASTHA wrote:

> hi
> i am tried to use the perl wrappers for EMBOSS with:
>
> use lib "/Users/anjan/perl_directory/bioperl-1.5.2_102/";
> use Bio::Factory::EMBOSS;
>
> however it seems that Bio::Factory::EMBOSS cannot be found in the  
> bioperl
> directory mentioned above.
>
> so i tried to install Bio::Factory::EMBOSS from the cpan website. i  
> got the
> attached error message.
>
> any ideas on what i need to do to  make this work?
> all advice will be appreciated.
>
> tia,
>
> anjan
>
>
> -- 
> ANJAN PURKAYASTHA, PhD.
> Senior Computational Biologist
> ==========================
>
> 1101 King Street, Suite 310,
> Alexandria, VA 22314.
> 703.518.8040 (office)
> 703.740.6939 (mobile)
>
> email:
> anjan at vbi.vt.edu;
> anjan.purkayastha at gmail.com
>
> http://www.vbi.vt.edu
>
> ==========================
> < 
> emboss_install_error_message 
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign