[Bioperl-l] Bio::TreeIO parse from a string?

[Hilmar Lapp]

Like other IO interfaces in Bioperl you can supply -fh and as value a 
GLOB. In order to read from a string you'd use IO::String and then pass 
the handle via -fh.

	-hilmar

On Mar 6, 2006, at 10:21 PM, Rutger Vos wrote:

> Hi,
>
> is there a way to make Bio::TreeIO parse a string? Or from a handle?
>
> E.g.
>
> $treeio = Bio::TreeIO->new( -format => 'newick', -string => $newick );
>
> or
>
> open( my $handle, '<', \$newick ) or die $!;
> $treeio = Bio::TreeIO->new( -format => 'newick', -handle => $handle );
>
> Thanks!
>
> Rutger
>
> -- 
> ++++++++++++++++++++++++++++++++++++++++++++++++++++
> Rutger Vos, PhD. candidate
> Department of Biological Sciences
> Simon Fraser University
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> Phone: 604-291-5625
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> Personal site: http://www.sfu.ca/~rvosa
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> ++++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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