[Bioperl-l] BLAST and parsing question

[Torsten Seemann]

> Hi, I have a sequence and db I made myself. I have to run blast on
> subsequences of length 20 and identify the ones that are unique to my
> sequence. Any suggestion on how to go about doing this? 

So you want all length 20 subsequences (derived using a sliding window
from some set of sequences) which are do not appear in some other set of
sequences (virus-db) ? 

-- 
Torsten Seemann <torsten.seemann at infotech.monash.edu.au>
Victorian Bioinformatics Consortium