[Bioperl-l] BLAST and parsing question

[Robert Murphy]

Yes, that's basically it.  Find out which 20 unit long subsequences of my 
sequence are not found in my database.

-Robert


So you want all length 20 subsequences (derived using a sliding window
from some set of sequences) which are do not appear in some other set of
sequences (virus-db) ?

--
Torsten Seemann <torsten.seemann at infotech.monash.edu.au>
Victorian Bioinformatics Consortium