[Bioperl-l] Does BioPerl like mpiBlast?

Scott Lambdin lopaki at gmail.com
Thu Mar 17 17:19:28 EST 2005


Help please.  The scientists have found a blast job that eats all the
user memory (~4Gigabytes) on the little 32-bit blast server I set up
for them.  I was looking at giving them mpiBLAST so that they can
spread the database over some processes, but a requirement is to have
the BLAST program usable by the BioPerl.  Would it be hard for them to
use mpiBLAST in BioPerl?   That is, harder than using regular NCBI
BLAST?

--Scott


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