[Bioperl-l] Remote BLAST and BLAST Word Size

Henrik Nilsson henrik.nilsson at botany.gu.se
Sat Feb 15 15:39:46 EST 2003


I am under the understanding that increasing the BLAST Word length may
increase BLAST speed, and I'd like to play around with it so see what I
can get. Is it possible to set the word length in bioperl's remote
BLAST, something like

$Bio::Tools::Run::RemoteBlast::HEADER{'ENTREZ_QUERY'} =   'mouse[ORGN]
AND 17[WS]';  

? Or are there any other non-GUI ways of achieving this?


Henrik N

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