[Bioperl-l] cvs[checkout aborted]: cannot make directorybioperl-live/scripts/Bio::DB::GFF:

[Jason Stajich]

What a pain, that MANIFEST.  resynced the manifest and we are good.
Anoncvs should have this updated in about an hour.

-j

On Mon, 21 Jan 2002, jfreeman wrote:

> I got the latest bioperl-live from cvs, and when I did perl Makefile.PL,
> I got the following message:
>
> Warning: the following files are missing in your kit:
> 	scripts/Bio::DB::GFF/bulk_load_gff.pl
> 	scripts/Bio::DB::GFF/gadfly_to_gff.pl
> 	scripts/Bio::DB::GFF/load_gff.pl
> 	scripts/Bio::DB::GFF/sgd_to_gff.pl
> 	scripts/run_genscan.pl
> 	t/data/ecolitst.wublastn
>
> HTH,
>
> Jim Freeman
> Senior Scientist
> Variagenics, Inc.
>
> Lincoln Stein wrote:
> >
> > I've removed Bio::DB::GFF and added Bio-DB-GFF.  Someone will have to
> > completely remove Bio::DB::GFF from the CVS repository manually,
> > however, as it will linger on and break checkouts on Windows and
> > Macintosh machines.
> >
> > Lincoln
> >
> > Jason Stajich writes:
> >  > Ray - Pretty sure this the fact that windows can't handle '::' in the name
> >  > of a directory.  Lincoln - can we possible rename this to something like
> >  > Bio-DB-GFF?
> >  >
> >  > -jason
> >  > On Tue, 15 Jan 2002 RjGrimaila@aol.com wrote:
> >  >
> >  > > I recently tried to check out a cvs copy of bioperl-live via anonymous cvs,
> >  > > cvs -d :pserver:cvs@cvs.bioperl.org:/home/repository/bioperl checkout
> >  > > bioperl-live
> >  > > The process got into the bioperl-live/scripts directory and aborted with the
> >  > > following error message:
> >  > > cvs [checkout aborted]: cannot make directory
> >  > > bioperl-live/scripts/Bio::DB::GFF:
> >  > >  No such file or directory
> >  > > I am using cygwin on a PC, ME OS.  I had no problem with checkout or update
> >  > > on bioperl-live last month, and I have no problem with checkout or updates on
> >  > > bioperl-db, bioperl-gui, bioperl-ext, etc.
> >  > >
> >  > > Any suggestions, other than RTFM?
> >  > >
> >  > > --rjgrimaila
> >  > >
> >  >
> >  > --
> >  > Jason Stajich
> >  > Duke University
> >  > jason@cgt.mc.duke.edu
> >  >
> >
> > --
> > ========================================================================
> > Lincoln D. Stein                           Cold Spring Harbor Laboratory
> > lstein@cshl.org                                   Cold Spring Harbor, NY
> > Positions available at my lab: see http://stein.cshl.org/#hire
> > ========================================================================
> > _______________________________________________
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> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu