[Bioperl-l] cvs[checkout aborted]: cannot make directorybioperl-live/scripts/Bio::DB::GFF:

[jfreeman]

I got the latest bioperl-live from cvs, and when I did perl Makefile.PL,
I got the following message:

Warning: the following files are missing in your kit:
	scripts/Bio::DB::GFF/bulk_load_gff.pl
	scripts/Bio::DB::GFF/gadfly_to_gff.pl
	scripts/Bio::DB::GFF/load_gff.pl
	scripts/Bio::DB::GFF/sgd_to_gff.pl
	scripts/run_genscan.pl
	t/data/ecolitst.wublastn

HTH,

Jim Freeman
Senior Scientist
Variagenics, Inc.

Lincoln Stein wrote:
> 
> I've removed Bio::DB::GFF and added Bio-DB-GFF.  Someone will have to
> completely remove Bio::DB::GFF from the CVS repository manually,
> however, as it will linger on and break checkouts on Windows and
> Macintosh machines.
> 
> Lincoln
> 
> Jason Stajich writes:
>  > Ray - Pretty sure this the fact that windows can't handle '::' in the name
>  > of a directory.  Lincoln - can we possible rename this to something like
>  > Bio-DB-GFF?
>  >
>  > -jason
>  > On Tue, 15 Jan 2002 RjGrimaila@aol.com wrote:
>  >
>  > > I recently tried to check out a cvs copy of bioperl-live via anonymous cvs,
>  > > cvs -d :pserver:cvs@cvs.bioperl.org:/home/repository/bioperl checkout
>  > > bioperl-live
>  > > The process got into the bioperl-live/scripts directory and aborted with the
>  > > following error message:
>  > > cvs [checkout aborted]: cannot make directory
>  > > bioperl-live/scripts/Bio::DB::GFF:
>  > >  No such file or directory
>  > > I am using cygwin on a PC, ME OS.  I had no problem with checkout or update
>  > > on bioperl-live last month, and I have no problem with checkout or updates on
>  > > bioperl-db, bioperl-gui, bioperl-ext, etc.
>  > >
>  > > Any suggestions, other than RTFM?
>  > >
>  > > --rjgrimaila
>  > >
>  >
>  > --
>  > Jason Stajich
>  > Duke University
>  > jason@cgt.mc.duke.edu
>  >
> 
> --
> ========================================================================
> Lincoln D. Stein                           Cold Spring Harbor Laboratory
> lstein@cshl.org                                   Cold Spring Harbor, NY
> Positions available at my lab: see http://stein.cshl.org/#hire
> ========================================================================
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